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Sandboxed application can't communicate with browser extension
I have installed 1Password from the Ubuntu Software Center and installed the accompanying Chromium browser extension. When I launch 1Password, then go to Settings > Browser, I see the following text:...
I see. Communicating with a root-owned keyring sounds like a violation for flatpak but I'm not really an expert on this. There is a portal to keep secrets inside the user's keychain but I'm not sure that's secure enough for you. I'm also not sure whether the sandbox allows you to communicate with a keyring inside the kernel.
https://opensource.com/article/19/11/secrets-management-flatpak-applications
